Frayer, M. E., and B. A. Payseur (2021). Demographic history shapes genomic ancestry in hybrid zones. Ecology and Evolution, 11, 10290-10302.

Stratton, J. D., M. J. Nolte, and B. A. Payseur (2021). Evolution of boldness and exploratory behavior in giant mice from Gough Island. Behavioral Ecology and Sociobiology, 75, 65.

Peterson, A. L., and B. A. Payseur (2021). Sex-specific variation in the genome-wide recombination rate. Genetics, 217, 1-11. doi.org/10.1093/genetics/iyaa019.

Payseur, B. A., and P. Jing (2021). Genomic targets of positive selection in giant mice from Gough Island. Molecular Biology and Evolution, 38, 911-926.


Nolte, M. J., P. Jing, C. N. Dewey, and B. A. Payseur (2020). Giant island mice exhibit widespread gene expression changes in key metabolic organs. Genome Biology and Evolution, 12, 1277-1301.

Kartje, M. E., Jing, P., and Payseur, B. A. (2020). Weak correlation between nucleotide variation and recombination rate across the house mouse genome. Genome Biology and Evolution, 12, 293-299.

Morgan, K., Harr, B., White, M. A., Payseur, B. A., and Turner, L. M. (2020). Disrupted gene networks in subfertile hybrid house mice. Molecular Biology and Evolution, 37 (6), 1547–1562.

Parmenter, M. D., Nelson, J. P., Weigel, S. E., Gray, M. M., Payseur, B. A., and Vinyard, C. J. (2020). Masticatory apparatus performance and functional morphology in the extremely large mice from Gough Island. The Anatomical Record, 303 (1), 167-179.


Otto, S. P., and Payseur, B. A. (2019). Crossover Interference: Shedding Light on the Evolution of Recombination. Annual Review of Genetics, 53, 19-44.

Dapper, A. L., and Payseur, B. A. (2019). Molecular evolution of the meiotic recombination pathway in mammals. Evolution, 73 (12), 2368-2389.

Wang, R. J., Dumont, B. L., Jing, P., and Payseur, B. A. (2019). A first genetic portrait of synaptonemal complex variation. PLoS Genetics, 15(8), e1008337.

Peterson, A. L., Miller, N. D., and Payseur, B. A. (2019). Conservation of the Genome-Wide Recombination Rate in White-Footed Mice. Heredity, 123, 442–457.

Jensen, J. D., Payseur, B. A., Stephan, W., Aquadro, C. F., Lynch, M., Charlesworth, D., and Charlesworth, B. (2019). The importance of the Neutral Theory in 1968 and 50 years on: a response to Kern and Hahn 2018. Evolution, 73(1), 111-114.


Schwahn, D. J., Wang, R. J., White, M. A., and Payseur, B. A. (2018). Genetic dissection of hybrid male sterility across stages of spermatogenesis. Genetics, 210(4), 1453-1465.

Payseur, B. A., Presgraves, D. C., and Filatov, D. A. (2018). Sex Chromosomes and Speciation. Molecular Ecology, 27(19), 3745-3748.

Hvala, J. A., Frayer, M. E., and Payseur, B. A. (2018). Signatures of hybridization and speciation in genomic patterns of ancestry. Evolution, 72(8), 1540-1552.

Dapper, A. L., and Payseur, B. A. (2018). Effects of Demographic History on the Detection of Recombination Hotspots from Linkage Disequilibrium. Molecular Biology and Evolution, 35(2), 335-353.


Dapper, A. L., and Payseur, B. A. (2017). Connecting Theory and Data in Recombination Rate Evolution. Philosophical Transactions of the Royal Society B, 372, 20160469.

Wang, R. J., and Payseur, B. A. (2017). Genetics of genome-wide recombination rate evolution in mice from an isolated island. Genetics, 206(4), 1841-1852.

Wang, R. J., Gray, M. M., Parmenter, M. D., Broman, K. W., and Payseur, B. A. (2017). Recombination rate variation in mice from an isolated island. Molecular Ecology, 26(2), 457-470.


Parmenter, M. D., Gray, M. M., Hogan, C. A., Ford, I.N., Broman, K.W., Vinyard, C. J., and Payseur, B. A. (2016). Genetics of skeletal evolution in unusually large mice from Gough Island. Genetics, 204(4), 1559-1572.

Payseur, B. A. (2016). Genetic links between recombination and speciation. PLoS Genetics, 12(6), e1006066.

Payseur, B. A., and Rieseberg, L. H. (2016). A genomic perspective on hybridization and speciation. Molecular Ecology, 25(11), 2337-2360.

Gasch, A. P., Payseur, B. A., and Pool, J. E. (2016). The power of natural variation for model organism biology. Trends in Genetics, 32(3), 147-154.

Haasl, R. J., and Payseur, B. A. (2016). Fifteen years of genomewide scans for selection: trends, lessons, and unaddressed genetic sources of complication. Molecular Ecology, 25(1), 5-23.


Gray, M. M., Parmenter, M. D., Hogan, C. A., Ford, I., Cuthbert, R. J., Ryan, P. G., Broman, K. W., and Payseur, B. A. (2015). Genetics of Rapid and Extreme Size Evolution in Island Mice. Genetics, 201(1), 213-228.

Wang, R. J., White, M. A., & Payseur, B. A. (2015). The Pace of Hybrid Incompatibility Evolution in House Mice. Genetics, 201(1), 229-242.


Payseur, B. A. Disproportionate Roles for the X Chromosome and Proteins in Adaptive Evolution. Genetics 196.4 (2014): 931-935.

Haasl, R. J., and B. A. Payseur. "Remarkable selective constraints on exonic dinucleotide repeats." Evolution 68.9 (2014): 2737-2744.

Haasl, R. J., R. C. Johnson, and B. A. Payseur (2014). The effects of microsatellite selection on linked sequence diversity. Genome Biology and Evolution 6:1843-1861.

Gray, M. M., D. Wegmann, R. J. Haasl, M. A. White, S. I. Gabriel, J. B. Searle, R. J. Cuthbert, P. G. Ryan, and B. A. Payseur (2014). Demographic history of a recent invasion of house mice on the isolated island of Gough. Molecular Ecology 23:1923-1939.

Turner, L. M., M. A. White, D. Tautz, and B. A. Payseur (2014). Genomic networks of hybrid sterility. PLoS Genetics 10:e1004162.


Payseur, B. A. (2013). Dissection of complex trait evolution (Section 5.13). Princeton Guide to Evolution. J. Losos, editor. Princeton University Press.

Wang, R. J., C. Ané, and B. A. Payseur (2013). The evolution of hybrid incompatibilities along a phylogeny. Evolution 67:2905-2922.

Haasl, R. J., McCarty, C. A., and Payseur, B. A. (2013). Genetic ancestry inference using support vector machines, and the active emergence of a unique American population. European Journal of Human Genetics, 21(5), 554-562.

Cutter, A. D., and Payseur, B. A. (2013). Genomic signatures of selection at linked sites: unifying the disparity among species. Nature Reviews Genetics.

Haasl, R. J., and Payseur, B. A. (2013). Microsatellites as targets of natural selection. Molecular biology and evolution, 30(2), 285-298.


Broman, K. W., Kim, S., Sen, S., Ané, C., and Payseur, B. A. (2012). Mapping quantitative trait loci onto a phylogenetic tree. Genetics, 192(1), 267-279.

White, M. A., A. Ikeda, and B. A. Payseur (2012). A pronounced evolutionary shift of the pseudoautosomal region boundary in house mice. Mamm Genome 2012 July 5 [Epub ahead of print]. [pdf]

Broman, K. W., S. Kim, S. Sen, C, Ane, and B. A. Payseur (2012). Mapping quantitative trait loci onto a phylogenetic tree. Genetics Jun 28 [Epub ahead of print]. [pdf]

White, M. A., M. Stubbings, B. L. Dumont, and B. A. Payseur (2012). Genetics and evolution of hybrid male sterility in house mice. Genetics May 2 [Epub ahead of print]. [pdf]


Keane, T. M., L. Goodstadt, P. Danecek, M. A. White, K. Wong, B. Yalcin, A. Heger, A. Agam, G. Slater, M. Goodson, N. A. Furotte, E. Eskin, C. Nellaker, H. Whitley, J. Cleak, D. Janowitz, P. Hernandez-Pliego, A. Edwards, T. G. Belgard, P. Oliver, R. E. McIntyre, A. Bhomra, J. Nicod, X. Gan, W. Yuan, L. v. d. Weyden, C. A. Steward, S. Balasubramaniam, J. Stalker, R. Mott, R. Durbin, I. Jackson, A. Czechanski, J. A. G. Assuno, L. R. Donahue, L. Reinholdt, B. A. Payseur, C. P. Ponting, E. Birney, J. Flint, and D. J. Adams (2011). Mouse genomic variation and its effect on phenotypes and gene regulation. Nature, 477: 289 - 294 . [pdf]

Nachman, M. W., and B. A. Payseur (2011). Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice. Philosophical Transactions of the Royal Society B, 367: 409 - 421. [pdf]

White, M. A., B. Steffy, T. Wiltshire, and B. A. Payseur (2011). Genetic dissection of a key reproductive barrier between nascent subspecies of house mice, Mus musculus domesticus and Mus musculus musculus. Genetics 169:289-304. [pdf]

Dumont, B. L., and B. A. Payseur (2011). Genetic analysis of genome-scale recombination rate evolution in house mice. PLoS Genetics 7(6):e1002116. [pdf]

Dumont, B. L. and B. A. Payseur (2011). Evolution of the Genomic Recombination Rate in Murid Rodents. Genetics 187: 643-657. [pdf]

Dumont, B. L., M. A. White, B. Steffy, T. Wiltshire, and B. A. Payseur (2011). Extensive recombination rate variation in the house mouse species complex inferred from genetic linkage maps. Genome Research 21(1): 114-25 [pdf]

Haasl, R. J., and B. A. Payseur (2011). Multi-locus inference of population structure: A comparison between single nucleotide polymorphisms and microsatellites. Heredity 106(1):158-71 [pdf]


Payseur, B. A., P. Jing, and R. J. Haasl (2010). A genomic portrait of human microsatellite variation. Molecular Biology and Evolution, 2010 Jul 30 [Epub ahead of print]. [pdf]

Haasl, R. J., and B. A. Payseur (2010). The number of alleles at a microsatellite defines the allele frequency spectrum and facilitates fast, accurate estimation of theta. Molecular Biology and Evolution 27(12):2702-2715 [pdf]

Payseur, B. A. (2010). Using differential introgression in hybrid zones to identify genomic regions involved in speciation. Molecular Ecology Resources 10(5): 806-820 [pdf]

Wong, A. K., A. L. Ruhe, B. L. Dumont, K. R. Robertson, G. Guerrero, S. M. Shull, J. S. Ziegle, L. V. Millon, K. W. Broman, B. A. Payseur, and M. W. Neff (2010). A comprehensive linkage map of the dog genome. Genetics 184:595-605. [pdf]


White, M. A., C. Ane, C. N. Dewey, B. R. Larget, and B. A. Payseur (2009). Fine-scale phylogenetic discordance across the house mouse genome. PLOS Genetics 5(11):e1000729. [pdf]

Dumont, B. L., K. W. Broman, and B. A. Payseur (2009). Variation in genomic recombination rates among heterogeneous stock mice. Genetics 182(4):1345-9. [pdf]

Moyle, L. C., and B. A. Payseur (2009). Reproductive isolation grows on trees. Trends in Ecology and Evolution 24(11):591-8. [pdf]

Shim, H., H. Chun, C. D. Engelman, and B. A. Payseur (2009). Genome-wide association studies using SNPs vs. haplotypes: An empirical comparison with data from the North American Rheumatoid Arthritis Consortium. BMC Proceedings, 3(Suppl 7):S35. [pdf]

Payseur, B. A., and P. Jing (2009). A genome-wide comparison of population structure at STRPs and nearby SNPs in humans. Molecular Biology and Evolution 26:1369-1377. [pdf] & [STRP Genotypes]

Payseur, B. A. (2009). Y not introgress? Insights into the genetics of speciation in European rabbits (invited Perspective). Molecular Ecology 18:23-24. [pdf]


Vinyard C. J., and B. A. Payseur (2008). Of “mice” and mammals: Utilizing classical inbred mice to study the genetic architecture of organismal-level function and performance in mammals. Integrative and Comparative Biology doi:10.1093/icb/icn063. [pdf]

Payseur B. A., M. Place, and J. L. Weber (2008). Linkage Disequilibrium between STRPs and SNPs across the Human Genome. The American Journal of Human Genetics. 82:1039-1050. [pdf] & [STRP Genotypes]

Dumont B. L., and B. A. Payseur (2008). Evolution of the genomic recombination rate in mammals. Evolution 62(2):276-294. [pdf]

Teeter K. C., B. A. Payseur, L. W. Harris, M. Bakewell, L. M. Thibodeau, J. E. O'Brien, J. G. Krenz, M. A. Sans-Fuentes, M. W. Nachman, and P. T. Tucker (2008). Genome-wide patterns of gene flow across a house mouse hybrid zone. Genome Research 18(1):67-76. [pdf]


Williamson S.H., M. J. Hubisz, A. G. Clark, B. A. Payseur, C. D. Bustamante, and R. Nielsen (2007). Localizing recent adaptive evolution in the human genome. PLoS Genetics 3:e90. [pdf]

Payseur B. A., and M. Place (2007). Searching the genomes of inbred mouse strains for incompatibilities that separate their wild relatives. Journal of Heredity 98:115-122. [pdf]

Payseur B. A., and M. Place (2007). Prospects for association mapping in classical inbred strains of mice. Genetics 175:1999-2008. [pdf]


Payseur B. A., A. G. Clark, J. Hixson, E. Boerwinkle, and C. F. Sing (2006). Contrasting multi-site genotypic distributions among discordant quantitative phenotypes: the APOA1/C3/A4/A5 gene cluster and cardiovascular disease risk factors. Genetic Epidemiology 30:508-518. [pdf]

Payseur B. A., and A. D. Cutter (2006). Integrating patterns of polymorphism at SNPs and STRs. Trends in Genetics 22:424-429. [pdf]


Payseur B. A., and H. E. Hoekstra (2005). Signatures of reproductive isolation in patterns of single nucleotide diversity across inbred strains of house mice. Genetics 171:1905-1916. [pdf]

Payseur B. A., and M. W. Nachman (2005). The genomics of speciation: investigating the molecular correlates of X chromosome introgression across the hybrid zone between Mus domesticus and Mus musculus. Biological Journal of the Linnean Society 84:523-534.


Payseur B. A., J. G. Krenz, and M. W. Nachman (2004). Differential patterns of introgression across the X chromosome in a hybrid zone between two species of house mice. Evolution 58:2064-2078. [pdf]

Storz J. F., B. A. Payseur, and M. W. Nachman (2004). Genome scans of DNA variability in humans reveal evidence of selective sweeps outside of Africa. Molecular Biology and Evolution 21:1800-1811. [pdf]

Jensen-Seaman M. I., T. S. Furey, B. A. Payseur, Y. Lu, K. M. Roskin, C-F Chen, M. A. Thomas, D. Haussler, and H. J. Jacob (2004). Comparative recombination rates in the rat, mouse, and human genomes. Genome Research 14:528-538. [pdf]

Rat Genome Sequencing Project Consortium (2004). Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 428:493-521. [pdf]


Cutter A.D., B. A. Payseur, T. Salcedo, A. M. Estes, J. M. Good, E. Wood, T. Hartl, H. Maughan, J. Strempel, B. Wang, A. C. Bryan, and M. Dellos (2003). Molecular correlates of genes exhibiting RNAi phenotypes in Caenorhabditis elegans. Genome Research 13:2651-2657. [pdf]

Cutter A. D., and B. A. Payseur (2003). Rates of deleterious mutation and the evolution of sex in Caenorhabditis. Journal of Evolutionary Biology 16:812-822. [pdf]

Cutter A.D., and B. A. Payseur (2003). Selection at linked sites in the partial selfer Caenorhabditis elegans. Molecular Biology and Evolution 20:665-673. [pdf]


Payseur B. A., and M. W. Nachman (2002). Natural selection at linked sites in humans. Gene 30:31-42. [pdf]

Payseur B. A., A. D. Cutter, and M. W. Nachman (2002). Searching for evidence of positive selection in the human genome using patterns of microsatellite variability. Molecular Biology and Evolution 19:1143-1153. [pdf]

Payseur B. A., and M. W. Nachman (2002). Gene density and human nucleotide polymorphism. Molecular Biology and Evolution 19:336-340. [pdf]

1999 - 2001

Yoder A.D., J. A. Irwin, and B. A. Payseur (2001). Failure of the ILD to determine data combinability for slow loris phylogeny. Systematic Biology 50:408-424.

Payseur B. A., and M. W. Nachman (2000). Microsatellite variation and recombination rate in the human genome. Genetics 156:1285-1298. [pdf]

Payseur B. A., H. H. Covert, C. J. Vinyard, and M. Dagosto (1999). New body mass estimates for Omomys carteri, a middle Eocene primate from North America. American Journal of Physical Anthropology 109:41-52. [pdf]